English  |  正體中文  |  简体中文  |  Post-Print筆數 : 11 |  Items with full text/Total items : 89685/119491 (75%)
Visitors : 23936601      Online Users : 121
RC Version 6.0 © Powered By DSPACE, MIT. Enhanced by NTU Library IR team.
Scope Tips:
  • please add "double quotation mark" for query phrases to get precise results
  • please goto advance search for comprehansive author search
  • Adv. Search
    HomeLoginUploadHelpAboutAdminister Goto mobile version
    Please use this identifier to cite or link to this item: http://nccur.lib.nccu.edu.tw/handle/140.119/97016


    Title: T-Coffee: tree-based consistency objective function for alignment evaluation
    Authors: 張家銘
    Magis, Cedrik;Taly, Jean-François;Bussotti, Giovanni;Chang, Jia-Ming;Tommaso, Paolo Di;Erb, Ionas
    Contributors: 資科系
    Keywords: MSA;3D structure;Protein sequences;Transmembrane protein;Homolog sequences;DNA/RNA sequences;Promoter alignment;RNA secondary structure
    Date: 2013-11
    Issue Date: 2016-05-30 17:25:12 (UTC+8)
    Abstract: T-Coffee, for Tree-based consistency objective function for alignment evaluation, is a versatile multiple sequence alignment (MSA) method suitable for aligning virtually any type of biological sequences. T-Coffee provides more than a simple sequence aligner; rather it is a framework in which alternative alignment methods and/or extra information (i.e., structural, evolutionary, or experimental information) can be combined to reach more accurate and more meaningful MSAs. T-Coffee can be used either by running input data via the Web server (http://​tcoffee.​crg.​cat/​apps/​tcoffee/​index.​html) or by downloading the T-Coffee package. Here, we present how the package can be used in its command line mode to carry out the most common tasks and multiply align proteins, DNA, and RNA sequences. This chapter particularly emphasizes on the description of T-Coffee special flavors also called “modes,” designed to address particular biological problems.
    Relation: Multiple Sequence Alignment Methods, Humana Press, pp.117-129
    Data Type: book/chapter
    DOI 連結: http://dx.doi.org/10.1007/978-1-62703-646-7_7
    DOI: 10.1007/978-1-62703-646-7_7
    Appears in Collections:[資訊科學系] 專書/專書篇章

    Files in This Item:

    File Description SizeFormat
    index.html0KbHTML798View/Open


    All items in 政大典藏 are protected by copyright, with all rights reserved.


    社群 sharing

    著作權政策宣告
    1.本網站之數位內容為國立政治大學所收錄之機構典藏,無償提供學術研究與公眾教育等公益性使用,惟仍請適度,合理使用本網站之內容,以尊重著作權人之權益。商業上之利用,則請先取得著作權人之授權。
    2.本網站之製作,已盡力防止侵害著作權人之權益,如仍發現本網站之數位內容有侵害著作權人權益情事者,請權利人通知本網站維護人員(nccur@nccu.edu.tw),維護人員將立即採取移除該數位著作等補救措施。
    DSpace Software Copyright © 2002-2004  MIT &  Hewlett-Packard  /   Enhanced by   NTU Library IR team Copyright ©   - Feedback