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Introduction:
本系師資之專長以網路通訊、多媒體、智慧計算與資訊系統等四大領域為主,並以積極努力整合各領域的框架為目標。此外,本系在政大以人文社會見長的環境中,已經逐漸摸索出資訊科技與人文社會學科各領域接軌與加值的角色,在跨學科、跨領域的教育訓練及研究定位上,具備了獨特的角度。
National Chengchi University (NCCU) is a school distinguished in the liberal arts. In contrast to our counterparts in other, more science and engineering-oriented universities, our department offers students an education that integrates the schools of humanities.
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Items for Author "Cattoni, Diego I."
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Showing 27 items.
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[資訊科學系] 專書/專書篇章
2013-11
T-Coffee: tree-based consistency objective function for alignment evaluation
張家銘 ; Magis, Cedrik ; Taly, Jean-François ; Bussotti, Giovanni ; Chang, Jia-Ming ; Tommaso, Paolo Di ; Erb, Ionas
[資訊科學系] 會議論文
2019-11
PSLCNN: Protein Subcellular Localization Prediction for Eukaryotes and Prokaryotes Using Deep Learning
張家銘 ; Chang, Jia-Ming ; Chang, Che-Yu ; Hsu, Tz-Wei
[資訊科學系] 會議論文
2019-07
Identification of alternative splicing characteristic associated with clear-cell ovarian cancer from paired normal and tumor tissues
張家銘 ; HUANG, YU-TING ; SHIAO, MENG-SHIN ; TSAI, CHEN-AN ; LAN, KUER-YUAN ; LIN, CHIEH-HSI ; JIANAWATH, NATINI
[資訊科學系] 期刊論文
2023-02
Topological screen identifies hundreds of Cp190 and CTCF dependent Drosophila chromatin insulator elements
張家銘 ; Chang, Jia-Ming ; Kahn, Tatyana G., Savitsky, Mikhail ; Kuong, Chikuan ; Jacquier, Caroline ; Cavalli, Giacomo ; Schwartz, Yuri B.
[資訊科學系] 期刊論文
2022-12
Pattern recognition of topologically associating domains using deep learning
張家銘 ; Chang, Jia-Ming ; Yang, Jhen Yuan
[資訊科學系] 期刊論文
2022-02
HiCmapTools: a tool to access HiC contact maps
張家銘 ; Chang, Jia-Ming ; Weng, Yi-Fu ; Chang, Wei-Ting ; Lin, Fu-An ; Cavalli, Giacomo
[資訊科學系] 期刊論文
2021-10
Circulating Exosomal miRNAs as Biomarkers in Epithelial Ovarian Cancer
張家銘 ; Chang, Jia-Ming ; Shiao, Meng-Shin ; Lertkhachonsuk, Arb-Aroon ; Rermluk, Naparat ; Jinawath, Natini
[資訊科學系] 期刊論文
2019-12
MS2CNN: Predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks
張家銘 ; Chang, Jia-Ming ; Lin, Yang Ming ; Chen, Ching-Tai
[資訊科學系] 期刊論文
2019-11
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
張家銘 ; Chang, Jia-Ming ; organization, CAFA3
[資訊科學系] 期刊論文
2019-02
Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability
張家銘 ; Chang, Jia-Ming ; Floden, Evan W. ; Herrero, Javier ; Gascuel, Olivier ; Tommaso, Paolo Di ; Notredame, Cedric
[資訊科學系] 期刊論文
2018-07
Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
Ogiyama, Yuki ; Schuettengruber, Bernd ; Papadopoulos, Giorgio L. ; 張家銘 ; Chang, Jia-Ming ; Cavalli, Giacomo
[資訊科學系] 期刊論文
2018-02
TADs are 3D structural units of higher-order chromosome organization in Drosophila
張家銘 ; Szabo, Quentin ; Jost, Daniel ; Chang, Jia-Ming ; Cattoni, Diego I.
[資訊科學系] 期刊論文
2017-11
Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions
張家銘 ; Cattoni, Diego I. ; González, Inma ; Chang, Jia-Ming ; Sexton, Thomas ; Marc, A. Marti-Renom ; Bantignies, Frédéric
[資訊科學系] 期刊論文
2016-04
PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases
張家銘 ; Floden, Evan ; Tommaso, Paolo Di ; Chatzou, Maria ; Magis, Cedrik ; Notredame, Cedric ; Chang, Jia-Ming
[資訊科學系] 期刊論文
2015-11
Multiple sequence alignment modeling: methods and applications
張家銘 ; Chatzou, Maria ; Magis, Cedrik ; Chang, Jia-Ming ; Kemena, Carsten ; Bussotti, Giovanni ; Erb, Ionas
[資訊科學系] 期刊論文
2015-10
Expression divergence of chemosensory genes between Drosophila sechellia and its sibling species and its implications for host shift
張家銘 ; Shiao, Meng-Shin ; Chang, Jia-Ming ; Fan, Wen-Lang ; Lu, Mei-Yeh Jade ; Notredame, Cedric ; Fang, Shu
[資訊科學系] 期刊論文
2015-07
TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction
張家銘 ; Chang, Jia-Ming ; Tommaso, Paolo Di ; Lefort, Vincent ; Gascuel, Olivier ; Notredame, Cedric
[資訊科學系] 期刊論文
2014-10
Alignathon: A competitive assessment of whole genome alignment methods
張家銘
[資訊科學系] 期刊論文
2014-06
TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction
張家銘 ; Chang, Jia-Ming ; Tommaso, Paolo Di ; Notredame, Cedric
[資訊科學系] 期刊論文
2013-10
Efficient and Interpretable Prediction of Protein Functional Classes by Correspondence Analysis and Compact Set Relations
Chang, J.-M. ; 張家銘 ; Su, E.C.-Y. ; Notredame, C. ; Tang, C.Y. ; Hsu, W.-L. ; Sung, T.-Y. ; Erb, I. ; Taly, J.-F.
[資訊科學系] 期刊論文
2012-12
Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing
Su, Emily Chia-Yu ; 張家銘 ; Hsu, Wen-Lian ; Sung, Ting-Yi ; Cheng, Cheng-Wei ; Chang, Jia-Ming
[資訊科學系] 期刊論文
2012-03
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
張家銘 ; Chang, Jia-Ming ; Notredame, Cedric ; Taly, Jean-François ; Tommaso, Paolo Di
[資訊科學系] 期刊論文
2012
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
Chang, Jia-Ming ; 張家銘 ; Notredame, Cedric ; Taly, Jean-François ; Tommaso, Paolo Di
[資訊科學系] 期刊論文
2011-12
Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words
張家銘 ; Chang, Jia-Ming ; Hsu*, Wen-Lian ; Sung*, Ting-Yi ; Notredame, Cédric ; Lin, Hsin-Nan
[資訊科學系] 期刊論文
2011-11
Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures
Chang, Jia-Ming ; 張家銘 ; Notredame, Cedric ; Kemena, Carsten ; Jose, Espinosa-Carrasco ; Erb, Ionas ; Tommaso, Paolo Di ; Bussotti, Giovanni ; Magis, Cedrik ; Jean-Francois ; Taly
[資訊科學系] 期刊論文
2011-07
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
Chang, Jia-Ming ; 張家銘 ; Notredame, Cedric ; Taly, Jean-François ; Montanyola, Alberto ; Orobitg, Miquel ; Xenarios, Ioannis ; Moretti, Sebastien ; Tommaso, Di ; Paolo
[資訊科學系] 期刊論文
2011
Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words
Lin, Hsin-Nan ; Notredame, Cédric ; Chang, Jia-Ming ; Sung, Ting-Yi ; Hsu, Wen-Lian ; 張家銘